API

Package API

• kemstem.atomic
  • Submodules
  • kemstem.atomic.columnfind module
    • find_columns()
    • refine_columns()
  • kemstem.atomic.neighborhood module
    • cluster_neighbors()
    • get_connected_columns()
    • get_neighborhood()
    • get_vector_to_neighbors()
    • index_lattice()
  • kemstem.atomic.periodicdistortion module
    • measure_displacements()
  • Module contents
• kemstem.fourier
  • Submodules
  • kemstem.fourier.fourierfilter module
    • coarsening_length()
    • create_gaussian_filter()
    • damp_complex_amplitude()
    • damp_peaks_circle()
    • fourier_filter()
    • mask_peaks_circle()
  • kemstem.fourier.peakpick module
    • prepare_fourier_pattern()
    • refine_peaks_com()
    • refine_peaks_gf()
    • select_peaks()
  • kemstem.fourier.phaselock module
    • create_references()
    • gpa()
    • phaselock()
  • kemstem.fourier.strain module
    • calculate_strain_tensor()
    • phase_to_strain()
  • kemstem.fourier.wavefit module
    • fit_grating()
    • peak_to_fit_guess()
    • test_fit()
  • Module contents
• kemstem.util
  • Submodules
  • kemstem.util.func module
    • gaussian_2d()
    • sin2D()
  • kemstem.util.general module
    • gaussian_fit_peaks()
    • get_patch()
    • normalize()
    • normalize_max()
    • normalize_mean()
    • normalize_sum()
    • rasterize_from_points()
  • kemstem.util.image module
    • faux_highpass_filter()
    • hann_filter()
    • periodic_plus_smooth_decomposition()
  • kemstem.util.point module
    • extrapolate_point_pair()
    • get_nearest_points()
    • rotate_image_and_calculate_transform()
    • rotate_points()
  • kemstem.util.viz module
    • coarsening_marker()
    • neighborhood_scatter_plot()
    • plot_color_wheel()
    • plot_displaced_site()
    • plot_fit_comparison()
    • plot_numbered_points()
    • plot_phase()
    • plot_scalar_bonds()
    • plot_scalar_polygons()
    • plot_scalar_sites()
  • Module contents