Index

C

calculate_strain_tensor() (in module kemstem.fourier.strain) cluster_neighbors() (in module kemstem.atomic.neighborhood) coarsening_length() (in module kemstem.fourier.fourierfilter)

coarsening_marker() (in module kemstem.util.viz) create_gaussian_filter() (in module kemstem.fourier.fourierfilter) create_references() (in module kemstem.fourier.phaselock)

D

damp_complex_amplitude() (in module kemstem.fourier.fourierfilter)

damp_peaks_circle() (in module kemstem.fourier.fourierfilter)

E

extrapolate_point_pair() (in module kemstem.util.point)

F

faux_highpass_filter() (in module kemstem.util.image) find_columns() (in module kemstem.atomic.columnfind)

fit_grating() (in module kemstem.fourier.wavefit) fourier_filter() (in module kemstem.fourier.fourierfilter)

G

gaussian_2d() (in module kemstem.util.func) gaussian_fit_peaks() (in module kemstem.util.general) get_connected_columns() (in module kemstem.atomic.neighborhood) get_nearest_points() (in module kemstem.util.point)

get_neighborhood() (in module kemstem.atomic.neighborhood) get_patch() (in module kemstem.util.general) get_vector_to_neighbors() (in module kemstem.atomic.neighborhood) gpa() (in module kemstem.fourier.phaselock)

H

hann_filter() (in module kemstem.util.image)

I

index_lattice() (in module kemstem.atomic.neighborhood)

K

kemstem module kemstem.atomic module kemstem.atomic.columnfind module kemstem.atomic.neighborhood module kemstem.atomic.periodicdistortion module kemstem.fourier module kemstem.fourier.fourierfilter module kemstem.fourier.peakpick module kemstem.fourier.phaselock module

kemstem.fourier.strain module kemstem.fourier.wavefit module kemstem.util module kemstem.util.func module kemstem.util.general module kemstem.util.image module kemstem.util.point module kemstem.util.viz module kemstem.version module

M

mask_peaks_circle() (in module kemstem.fourier.fourierfilter) measure_displacements() (in module kemstem.atomic.periodicdistortion) module kemstem kemstem.atomic kemstem.atomic.columnfind kemstem.atomic.neighborhood kemstem.atomic.periodicdistortion kemstem.fourier kemstem.fourier.fourierfilter kemstem.fourier.peakpick kemstem.fourier.phaselock kemstem.fourier.strain kemstem.fourier.wavefit kemstem.util kemstem.util.func kemstem.util.general kemstem.util.image kemstem.util.point kemstem.util.viz kemstem.version

N

neighborhood_scatter_plot() (in module kemstem.util.viz) normalize() (in module kemstem.util.general)

normalize_max() (in module kemstem.util.general) normalize_mean() (in module kemstem.util.general) normalize_sum() (in module kemstem.util.general)

P

peak_to_fit_guess() (in module kemstem.fourier.wavefit) periodic_plus_smooth_decomposition() (in module kemstem.util.image) phase_to_strain() (in module kemstem.fourier.strain) phaselock() (in module kemstem.fourier.phaselock) plot_color_wheel() (in module kemstem.util.viz) plot_displaced_site() (in module kemstem.util.viz)

plot_fit_comparison() (in module kemstem.util.viz) plot_numbered_points() (in module kemstem.util.viz) plot_phase() (in module kemstem.util.viz) plot_scalar_bonds() (in module kemstem.util.viz) plot_scalar_polygons() (in module kemstem.util.viz) plot_scalar_sites() (in module kemstem.util.viz) prepare_fourier_pattern() (in module kemstem.fourier.peakpick)

R

rasterize_from_points() (in module kemstem.util.general) refine_columns() (in module kemstem.atomic.columnfind) refine_peaks_com() (in module kemstem.fourier.peakpick)

refine_peaks_gf() (in module kemstem.fourier.peakpick) rotate_image_and_calculate_transform() (in module kemstem.util.point) rotate_points() (in module kemstem.util.point)

S

select_peaks() (in module kemstem.fourier.peakpick)

sin2D() (in module kemstem.util.func)

T

test_fit() (in module kemstem.fourier.wavefit)